The Abcam drivers' affiliation said the risk of power was "deplorable" and said it dreaded for its individuals' security.
Prior Mr Temer said a "radical minority" had rejected an understanding came to on Thursday and was holding the populace prisoner.
Diesel costs in Brazil have almost multiplied since 2016.
The strike has conveyed the nation to a stop, with lines at petroleum stations, air terminals coming up short on fuel and general store racks exhaust.
What did President Temer say?
He said he had approved government security powers to clear thruways and advised state governors to do likewise.
A minority of drivers was keeping "numerous truckers from doing their desires to serve the general population and carry out their employments", he said.
They "didn't have the privilege to deaden the country", he included.
How have drivers reacted?
Abcam, which says it speaks to 600,000 drivers, advised drivers to enable transportation to come back to typical.
It said despite everything it needed drivers to dissent, however said this ought to be done calmly and without blocking streets.
Abcam was the main impetus behind the bars, which started on Monday.
On Thursday the legislature said it had achieved an arrangement to scrap fuel imposes and keep up a 10% diminishment in draw costs for a month as a byproduct of the dissents being suspended for 15 days.
Be that as it may, Abcam at first rejected the arrangement and advised its individuals to stay "firm" in their challenge until the point when the fuel tax breaks were marked into law.
How far reaching are the challenges?
On Friday there were still bars in everything except two of the nation's 26 states, government thruway police said.
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